BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB037H06SP1|AL430455
(864 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig442 1394 0.0
>3x_Contig442
Length = 2059
Score = 1394 bits (692), Expect = 0.0
Identities = 754/785 (96%), Gaps = 5/785 (0%)
Strand = Plus / Plus
Query: 83 aagaataaatatkcatgataggatgtatcctgaacagctctaaatctaccagaawgttct 142
|||||||||||| | ||||||| |||||||||| ||||||||||||||||||| |||||
Sbjct: 158 aagaataaatattc-tgatagg-tgtatcctgaccagctctaaatctaccagattgttct 215
Query: 143 gggtacaacgtgwaacgtagagcagcwaacgacttcaaaccttccaaagttatgggaccc 202
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 216 gggtacaacgtgtaacgtagagcagctaacgacttcaaaccttccaaagttatgggaccc 275
Query: 203 ttagggttcaaagagtacggagagtactggtgtagcacagatccaatcgtgattggataa 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ttagggttcaaagagtacggagagtactggtgtagcacagatccaatcgtgattggataa 335
Query: 263 ctcaacatcttcgttactgcagcwagctgaaactcwgtatccatagaataaaacgaacgc 322
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 336 ctcaacatcttcgttactgcagctagctgaaactctgtatccatagaataaaacgaacgc 395
Query: 323 gtgtaaaagaacaaatcccagttgctcatgttaaccatcctatcatagtcttggtcttgt 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gtgtaaaagaacaaatcccagttgctcatgttaaccatcctatcatagtcttggtcttgt 455
Query: 383 gggaaatcaaacwcgggaaawggcctacccgawctaagatcatgctcgtatatgtwaact 442
|||||||||||| ||||||| ||||||||||| |||||||||||||||||||||| ||||
Sbjct: 456 gggaaatcaaactcgggaaatggcctacccgatctaagatcatgctcgtatatgttaact 515
Query: 443 ttcttcaataactcatatctcttgcacttatggtactccgtgtccttttcccaggcctct 502
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 516 ttcttcaataactcatatctcttgctcttatggtactccgtgtccttttcccaggcctct 575
Query: 503 cttgaatggtgagtgggaatccctgatagtgggcatgtgaactggatatccttatgcgtc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 cttgaatggtgagtgggaatccctgatagtgggcatgtgaactggatatccttatgcgtc 635
Query: 563 actggacatgttgccatggccntaatccttgctgcacgcncgcgcaaatcgggcgaagga 622
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 636 actggacatgttgccatggccttaatccttgctgcacgctcgcgcaaatcgggcgaagga 695
Query: 623 gattggtcccatggatggaacctattctctkgkgtaggatcktcckgcga---smgagna 679
|||||||||||||||||||||||||||||| | |||||||| ||| |||| ||| |
Sbjct: 696 gattggtcccatggatggaacctattctctggggtaggatcgtccggcgaagccggagga 755
Query: 680 tccaaccccaaagcattacgaacgaaccccataatgggacgagtcatgggcttagccmgg 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 756 tccaaccccaaagcattacgaacgaaccccataatgggacgagtcatgggcttagcccgg 815
Query: 740 taaaccactggtgttctcgaagcaagcatcgttattcccttagaatcaaaccaaaaagaw 799
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 taaaccactggtgttctcgaagcaagcatcgttattcccttagaatcaaaccaaaaagaa 875
Query: 800 atgawagawaaaactgattaaaccagaaaacaaaggcgcaaagatagcttaaacctctag 859
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 atgaaagaaaaaactgattaaaccagaaaacaaaggcgcaaagatagcttaaacctctag 935
Query: 860 tacac 864
|||||
Sbjct: 936 tacac 940
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.714 1.33
Gapped
Lambda K H
1.40 0.714 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4076
Number of Sequences: 1807
Number of extensions: 4076
Number of successful extensions: 85
Number of sequences better than 1.0e-20: 1
length of query: 864
length of database: 10,358,551
effective HSP length: 16
effective length of query: 848
effective length of database: 10,329,639
effective search space: 8759533872
effective search space used: 8759533872
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.2 bits)
S1: 12 (24.7 bits)
S2: 50 (101.2 bits)